PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366890.1
Common NameCsa_2G285890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 216aa    MW: 23984.4 Da    PI: 10.26
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08121161954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Cucsa.366890.1 121 ARHRRERISQKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 161
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-14113172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-11114166No hitNo description
SuperFamilySSF474593.79E-14116171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6122161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDDIDILKST LSQSDMSSTF FPNNTAPNCT PHVLPIIPPP AYFSDYSPPP GTSLFQTTPT  60
IIPETPARQR RSGVSGGGMA AMREMIFRIA AMQPVEIDPE AIKAPKRRNV RISKDPQSVA  120
ARHRRERISQ KIRILQRLVP GGTKMDTASM LDEAVHYVKF LKRQVQTLEQ AGFNYNNNNN  180
NNNNFNNFVN SANLNYASAL FKACQIMPAS LQMQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457823.11e-125PREDICTED: transcription factor HEC2-like
SwissprotQ9SND42e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0A0LJI71e-159A0A0A0LJI7_CUCSA; Uncharacterized protein
STRINGVIT_18s0001g10400.t012e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-47bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]